J4_6T7T_008
3D structure
- PDB id
- 6T7T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of yeast 80S ribosome stalled on poly(A) tract.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GACUG*CAUAG*UGAUU*AUUAAC
- Length
- 21 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6T7T_008 not in the Motif Atlas
- Homologous match to J4_8P9A_017
- Geometric discrepancy: 0.0687
- The information below is about J4_8P9A_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_78485.1
- Basepair signature
- cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW
- Number of instances in this motif group
- 6
Unit IDs
6T7T|1|C1|G|2130
6T7T|1|C1|A|2131
6T7T|1|C1|C|2132
6T7T|1|C1|U|2133
6T7T|1|C1|G|2134
*
6T7T|1|C1|C|2146
6T7T|1|C1|A|2147
6T7T|1|C1|U|2148
6T7T|1|C1|A|2149
6T7T|1|C1|G|2150
*
6T7T|1|C1|U|2186
6T7T|1|C1|G|2187
6T7T|1|C1|A|2188
6T7T|1|C1|U|2189
6T7T|1|C1|U|2190
*
6T7T|1|C1|A|2317
6T7T|1|C1|U|2318
6T7T|1|C1|U|2319
6T7T|1|C1|A|2320
6T7T|1|C1|A|2321
6T7T|1|C1|C|2322
Current chains
- Chain C1
- 25S rRNA
Nearby chains
- Chain C2
- Small subunit ribosomal RNA; SSU rRNA
- Chain LA
- 60S ribosomal protein L2-A
- Chain Ln
- 60S ribosomal protein L41-A
- Chain Lp
- 60S ribosomal protein L43-A
Coloring options: