J4_6T83_002

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CUAUG*CGUC*GAG*CGUGUG

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6T83_002 not in the Motif Atlas

Homologous match to J4_8P9A_013

Geometric discrepancy: 0.1342

The information below is about J4_8P9A_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_12410.1

Basepair signature

cWW-cWW-F-F-cSS-F-cWW-tHS-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

6T83|1|1b|C|185
6T83|1|1b|U|186
6T83|1|1b|A|187
6T83|1|1b|U|188
6T83|1|1b|G|189
*
6T83|1|1b|C|205
6T83|1|1b|G|206
6T83|1|1b|U|207
6T83|1|1b|C|208
*
6T83|1|1b|G|212
6T83|1|1b|A|213
6T83|1|1b|G|214
*
6T83|1|1b|C|226
6T83|1|1b|G|227
6T83|1|1b|U|228
6T83|1|1b|G|229
6T83|1|1b|U|230
6T83|1|1b|G|231

Current chains

Chain 1b

25S rRNA

Nearby chains

Chain 3b

5.8S ribosomal RNA; 5.8S rRNA

Chain Cy

60S ribosomal protein L4-A

Chain Yy

60S ribosomal protein L26-A