J4_6T83_003

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CAAAUAU*AG*UGAU*AG

Length

15 nucleotides

Bulged bases

6T83|1|1b|A|1452, 6T83|1|1b|U|1455

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6T83_003 not in the Motif Atlas

Homologous match to J4_8C3A_003

Geometric discrepancy: 0.1481

The information below is about J4_8C3A_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6T83|1|1b|C|1451
6T83|1|1b|A|1452
6T83|1|1b|A|1453
6T83|1|1b|A|1454
6T83|1|1b|U|1455
6T83|1|1b|A|1456
6T83|1|1b|U|1457
*
6T83|1|1b|A|1475
6T83|1|1b|G|1476
*
6T83|1|1b|U|1877
6T83|1|1b|G|1878
6T83|1|1b|A|1879
6T83|1|1b|U|1880
*
6T83|1|1b|A|2352
6T83|1|1b|G|2353

Current chains

Chain 1b

25S rRNA

Nearby chains

Chain Py

60S ribosomal protein L17-A

Chain Ry

60S ribosomal protein L19-A

Chain dy

60S ribosomal protein L31-A