3D structure

PDB id
6T83 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of yeast disome (di-ribosome) stalled on poly(A) tract.
Experimental method
ELECTRON MICROSCOPY
Resolution
4 Å

Loop

Sequence
GGUUC*GGUUAG*CC*GGUCGUAC
Length
21 nucleotides
Bulged bases
6T83|1|1b|U|1523
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6T83_004 not in the Motif Atlas
Homologous match to J4_8P9A_015
Geometric discrepancy: 0.0998
The information below is about J4_8P9A_015
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_69051.6
Basepair signature
cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
Number of instances in this motif group
7

Unit IDs

6T83|1|1b|G|1492
6T83|1|1b|G|1493
6T83|1|1b|U|1494
6T83|1|1b|U|1495
6T83|1|1b|C|1496
*
6T83|1|1b|G|1520
6T83|1|1b|G|1521
6T83|1|1b|U|1522
6T83|1|1b|U|1523
6T83|1|1b|A|1524
6T83|1|1b|G|1525
*
6T83|1|1b|C|1614
6T83|1|1b|C|1615
*
6T83|1|1b|G|1829
6T83|1|1b|G|1830
6T83|1|1b|U|1831
6T83|1|1b|C|1832
6T83|1|1b|G|1833
6T83|1|1b|U|1834
6T83|1|1b|A|1835
6T83|1|1b|C|1836

Current chains

Chain 1b
25S rRNA

Nearby chains

Chain 3b
5.8S ribosomal RNA; 5.8S rRNA
Chain Ry
60S ribosomal protein L19-A
Chain Xy
60S ribosomal protein L25
Chain gy
60S ribosomal protein L34-A
Chain jb
60S ribosomal protein L37-A
Chain kb
60S ribosomal protein L38
Chain lb
60S ribosomal protein L39

Coloring options:


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