J4_6T83_011
3D structure
- PDB id
- 6T83 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of yeast disome (di-ribosome) stalled on poly(A) tract.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- AAG*CGAAAG*CCAUAAACUAUG*UU
- Length
- 23 nucleotides
- Bulged bases
- 6T83|1|2b|A|1026, 6T83|1|2b|U|1029, 6T83|1|2b|U|1031
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6T83_011 not in the Motif Atlas
- Homologous match to J4_8C3A_022
- Geometric discrepancy: 0.1162
- The information below is about J4_8C3A_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.4
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
6T83|1|2b|A|622
6T83|1|2b|A|623
6T83|1|2b|G|624
*
6T83|1|2b|C|975
6T83|1|2b|G|976
6T83|1|2b|A|977
6T83|1|2b|A|978
6T83|1|2b|A|979
6T83|1|2b|G|980
*
6T83|1|2b|C|1021
6T83|1|2b|C|1022
6T83|1|2b|A|1023
6T83|1|2b|U|1024
6T83|1|2b|A|1025
6T83|1|2b|A|1026
6T83|1|2b|A|1027
6T83|1|2b|C|1028
6T83|1|2b|U|1029
6T83|1|2b|A|1030
6T83|1|2b|U|1031
6T83|1|2b|G|1032
*
6T83|1|2b|U|1103
6T83|1|2b|U|1104
Current chains
- Chain 2b
- 18S rRNA
Nearby chains
- Chain Lb
- 40S ribosomal protein S11-A
- Chain Nb
- 40S ribosomal protein S13
- Chain Ob
- 40S ribosomal protein S14-A
- Chain Wb
- 40S ribosomal protein S22-A
- Chain Xb
- 40S ribosomal protein S23-A
- Chain ab
- 40S ribosomal protein S26-A
- Chain nb
- 60S ribosomal protein L41-A
- Chain pb
- 60S ribosomal protein L43-A
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