3D structure

PDB id
6T83 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of yeast disome (di-ribosome) stalled on poly(A) tract.
Experimental method
ELECTRON MICROSCOPY
Resolution
4 Å

Loop

Sequence
UC*GAGUCG*CUAAGUG*UAAA
Length
19 nucleotides
Bulged bases
6T83|1|1b|U|298
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6T83_027 not in the Motif Atlas
Homologous match to J4_8P9A_012
Geometric discrepancy: 0.1352
The information below is about J4_8P9A_012
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_45801.6
Basepair signature
cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW
Number of instances in this motif group
7

Unit IDs

6T83|1|1b|U|112
6T83|1|1b|C|113
*
6T83|1|1b|G|267
6T83|1|1b|A|268
6T83|1|1b|G|269
6T83|1|1b|U|270
6T83|1|1b|C|271
6T83|1|1b|G|272
*
6T83|1|1b|C|293
6T83|1|1b|U|294
6T83|1|1b|A|295
6T83|1|1b|A|296
6T83|1|1b|G|297
6T83|1|1b|U|298
6T83|1|1b|G|299
*
6T83|1|1b|U|316
6T83|1|1b|A|317
6T83|1|1b|A|318
6T83|1|1b|A|319

Current chains

Chain 1b
25S rRNA

Nearby chains

Chain Ly
60S ribosomal protein L13-A
Chain Ny
60S ribosomal protein L15-A
Chain hb
60S ribosomal protein L35-A
Chain ib
60S ribosomal protein L36-A

Coloring options:


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