J4_6TB3_004

3D structure

PDB id

6TB3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUAUG*CGUC*GAG*CGUGUG

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6TB3_004 not in the Motif Atlas

Homologous match to J4_8P9A_013

Geometric discrepancy: 0.1045

The information below is about J4_8P9A_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_12410.1

Basepair signature

cWW-cWW-F-F-cSS-F-cWW-tHS-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

6TB3|1|BQ|C|185
6TB3|1|BQ|U|186
6TB3|1|BQ|A|187
6TB3|1|BQ|U|188
6TB3|1|BQ|G|189
*
6TB3|1|BQ|C|205
6TB3|1|BQ|G|206
6TB3|1|BQ|U|207
6TB3|1|BQ|C|208
*
6TB3|1|BQ|G|212
6TB3|1|BQ|A|213
6TB3|1|BQ|G|214
*
6TB3|1|BQ|C|226
6TB3|1|BQ|G|227
6TB3|1|BQ|U|228
6TB3|1|BQ|G|229
6TB3|1|BQ|U|230
6TB3|1|BQ|G|231

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AK

60S ribosomal protein L26-A

Chain BE

60S ribosomal protein L4-A

Chain BS

5.8S ribosomal RNA; 5.8S rRNA