J4_6TB3_005
3D structure
- PDB id
- 6TB3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CAAAUAU*AG*UGAU*AG
- Length
- 15 nucleotides
- Bulged bases
- 6TB3|1|BQ|A|1452, 6TB3|1|BQ|U|1455
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6TB3_005 not in the Motif Atlas
- Homologous match to J4_8P9A_014
- Geometric discrepancy: 0.0715
- The information below is about J4_8P9A_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_87855.1
- Basepair signature
- cWW-F-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
6TB3|1|BQ|C|1451
6TB3|1|BQ|A|1452
6TB3|1|BQ|A|1453
6TB3|1|BQ|A|1454
6TB3|1|BQ|U|1455
6TB3|1|BQ|A|1456
6TB3|1|BQ|U|1457
*
6TB3|1|BQ|A|1475
6TB3|1|BQ|G|1476
*
6TB3|1|BQ|U|1877
6TB3|1|BQ|G|1878
6TB3|1|BQ|A|1879
6TB3|1|BQ|U|1880
*
6TB3|1|BQ|A|2352
6TB3|1|BQ|G|2353
Current chains
- Chain BQ
- 25S rRNA
Nearby chains
- Chain AX
- 60S ribosomal protein L17-A
- Chain BC
- 60S ribosomal protein L31-A
- Chain BF
- 60S ribosomal protein L19-A
Coloring options: