J4_6TBV_002

3D structure

PDB id

6TBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

6TBV|1|16S1|C|183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6TBV_002 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.0924

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

6TBV|1|16S1|G|142
6TBV|1|16S1|A|143
6TBV|1|16S1|G|144
*
6TBV|1|16S1|C|178
6TBV|1|16S1|A|179
6TBV|1|16S1|U|180
6TBV|1|16S1|A|181
6TBV|1|16S1|A|182
6TBV|1|16S1|C|183
6TBV|1|16S1|G|184
*
6TBV|1|16S1|C|193
6TBV|1|16S1|C|194
6TBV|1|16S1|A|195
6TBV|1|16S1|A|196
6TBV|1|16S1|A|197
6TBV|1|16S1|G|198
*
6TBV|1|16S1|U|219
6TBV|1|16S1|G|220
6TBV|1|16S1|C|221

Current chains

Chain 16S1

16S rRNA

Nearby chains

Chain S201

30S ribosomal protein S20