J4_6TBV_004

3D structure

PDB id

6TBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

6TBV|1|23S1|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6TBV_004 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.0864

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

6TBV|1|23S1|C|268
6TBV|1|23S1|C|269
*
6TBV|1|23S1|G|370
6TBV|1|23S1|A|371
6TBV|1|23S1|G|372
6TBV|1|23S1|U|373
6TBV|1|23S1|A|374
6TBV|1|23S1|G|375
*
6TBV|1|23S1|U|399
6TBV|1|23S1|G|400
6TBV|1|23S1|A|401
6TBV|1|23S1|A|402
6TBV|1|23S1|U|403
6TBV|1|23S1|A|404
6TBV|1|23S1|U|405
6TBV|1|23S1|G|406
*
6TBV|1|23S1|C|421
6TBV|1|23S1|A|422
6TBV|1|23S1|A|423
6TBV|1|23S1|G|424

Current chains

Chain 23S1

23S rRNA

Nearby chains

Chain L091

50S ribosomal protein L9

Chain L281

50S ribosomal protein L28