J4_6TBV_007

3D structure

PDB id

6TBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGAUAAA*UC*GCUU*AG

Length

15 nucleotides

Bulged bases

6TBV|1|23S1|G|1271, 6TBV|1|23S1|A|1272, 6TBV|1|23S1|U|1273, 6TBV|1|23S1|U|1647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6TBV_007 not in the Motif Atlas

Homologous match to J4_5J7L_021

Geometric discrepancy: 0.0698

The information below is about J4_5J7L_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.5

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

6TBV|1|23S1|C|1270
6TBV|1|23S1|G|1271
6TBV|1|23S1|A|1272
6TBV|1|23S1|U|1273
6TBV|1|23S1|A|1274
6TBV|1|23S1|A|1275
6TBV|1|23S1|A|1276
*
6TBV|1|23S1|U|1294
6TBV|1|23S1|C|1295
*
6TBV|1|23S1|G|1645
6TBV|1|23S1|C|1646
6TBV|1|23S1|U|1647
6TBV|1|23S1|U|1648
*
6TBV|1|23S1|A|2009
6TBV|1|23S1|G|2010

Current chains

Chain 23S1

23S rRNA

Nearby chains

Chain L171

50S ribosomal protein L17

Chain L221

50S ribosomal protein L22

Chain L321

50S ribosomal protein L32