J4_6TC3_003

3D structure

PDB id

6TC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GCG*CGAAAG*CCGUAAACGAUG*CC

Length

23 nucleotides

Bulged bases

6TC3|1|16S1|C|576, 6TC3|1|16S1|A|815, 6TC3|1|16S1|C|817, 6TC3|1|16S1|A|819

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6TC3_003 not in the Motif Atlas

Homologous match to J4_5J7L_003

Geometric discrepancy: 0.0545

The information below is about J4_5J7L_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61885.6

Basepair signature

cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F

Number of instances in this motif group

4

Unit IDs

6TC3|1|16S1|G|575
6TC3|1|16S1|C|576
6TC3|1|16S1|G|577
*
6TC3|1|16S1|C|764
6TC3|1|16S1|G|765
6TC3|1|16S1|A|766
6TC3|1|16S1|A|767
6TC3|1|16S1|A|768
6TC3|1|16S1|G|769
*
6TC3|1|16S1|C|810
6TC3|1|16S1|C|811
6TC3|1|16S1|G|812
6TC3|1|16S1|U|813
6TC3|1|16S1|A|814
6TC3|1|16S1|A|815
6TC3|1|16S1|A|816
6TC3|1|16S1|C|817
6TC3|1|16S1|G|818
6TC3|1|16S1|A|819
6TC3|1|16S1|U|820
6TC3|1|16S1|G|821
*
6TC3|1|16S1|C|879
6TC3|1|16S1|C|880

Current chains

Chain 16S1

16S rRNA

Nearby chains

Chain 23S1

Large subunit ribosomal RNA; LSU rRNA

Chain S081

30S ribosomal protein S8

Chain S121

30S ribosomal protein S12

Chain S151

30S ribosomal protein S15

Chain S171

30S ribosomal protein S17

Chain S211

30S ribosomal protein S21