J4_6TC3_006

3D structure

PDB id

6TC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6TC3_006 not in the Motif Atlas

Homologous match to J4_5J7L_020

Geometric discrepancy: 0.1614

The information below is about J4_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

6TC3|1|23S1|C|601
6TC3|1|23S1|A|602
6TC3|1|23S1|A|603
6TC3|1|23S1|G|604
*
6TC3|1|23S1|C|624
6TC3|1|23S1|G|625
6TC3|1|23S1|A|626
6TC3|1|23S1|A|627
6TC3|1|23S1|G|628
*
6TC3|1|23S1|C|635
6TC3|1|23S1|G|636
6TC3|1|23S1|A|637
6TC3|1|23S1|G|638
*
6TC3|1|23S1|C|650
6TC3|1|23S1|G|651
6TC3|1|23S1|U|652
6TC3|1|23S1|U|653
6TC3|1|23S1|A|654
6TC3|1|23S1|A|655
6TC3|1|23S1|G|656

Current chains

Chain 23S1

23S rRNA

Nearby chains

Chain L041

50S ribosomal protein L4

Chain L151

50S ribosomal protein L15

Chain L351

50S ribosomal protein L35