J4_6TC3_008

3D structure

PDB id

6TC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

6TC3|1|23S1|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6TC3_008 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.0504

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6TC3|1|23S1|G|1310
6TC3|1|23S1|G|1311
6TC3|1|23S1|U|1312
6TC3|1|23S1|U|1313
6TC3|1|23S1|C|1314
*
6TC3|1|23S1|G|1338
6TC3|1|23S1|G|1339
6TC3|1|23S1|U|1340
6TC3|1|23S1|G|1341
6TC3|1|23S1|A|1342
6TC3|1|23S1|G|1343
*
6TC3|1|23S1|C|1404
6TC3|1|23S1|U|1405
*
6TC3|1|23S1|A|1597
6TC3|1|23S1|A|1598
6TC3|1|23S1|U|1599
6TC3|1|23S1|C|1600
6TC3|1|23S1|G|1601
6TC3|1|23S1|U|1602
6TC3|1|23S1|A|1603
6TC3|1|23S1|C|1604

Current chains

Chain 23S1

23S rRNA

Nearby chains

Chain L231

50S ribosomal protein L23

Chain L341

50S ribosomal protein L34