J4_6TNN_001

3D structure

PDB id

6TNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mini-RNase III (Mini-III) bound to 50S ribosome with precursor 23S rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

CC*GAGUAC*GGAAUCCG*CAAG

Length

20 nucleotides

Bulged bases

6TNN|1|U|C|450

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6TNN_001 not in the Motif Atlas

Homologous match to J4_4WF9_001

Geometric discrepancy: 0.1323

The information below is about J4_4WF9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

6TNN|1|U|C|269
6TNN|1|U|C|270
*
6TNN|1|U|G|415
6TNN|1|U|A|416
6TNN|1|U|G|417
6TNN|1|U|U|418
6TNN|1|U|A|419
6TNN|1|U|C|420
*
6TNN|1|U|G|444
6TNN|1|U|G|445
6TNN|1|U|A|446
6TNN|1|U|A|447
6TNN|1|U|U|448
6TNN|1|U|C|449
6TNN|1|U|C|450
6TNN|1|U|G|451
*
6TNN|1|U|C|466
6TNN|1|U|A|467
6TNN|1|U|A|468
6TNN|1|U|G|469

Current chains

Chain U

pre-23S rRNA

Nearby chains

Chain u

50S ribosomal protein L28