J4_6TNN_006

3D structure

PDB id

6TNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mini-RNase III (Mini-III) bound to 50S ribosome with precursor 23S rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

UC*GGUUAG*CC*GCCCGUA

Length

17 nucleotides

Bulged bases

6TNN|1|U|U|1378

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6TNN_006 not in the Motif Atlas

Homologous match to J4_4WF9_006

Geometric discrepancy: 0.0982

The information below is about J4_4WF9_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_48150.1

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

8

Unit IDs

6TNN|1|U|U|1350
6TNN|1|U|C|1351
*
6TNN|1|U|G|1375
6TNN|1|U|G|1376
6TNN|1|U|U|1377
6TNN|1|U|U|1378
6TNN|1|U|A|1379
6TNN|1|U|G|1380
*
6TNN|1|U|C|1441
6TNN|1|U|C|1442
*
6TNN|1|U|G|1640
6TNN|1|U|C|1641
6TNN|1|U|C|1642
6TNN|1|U|C|1643
6TNN|1|U|G|1644
6TNN|1|U|U|1645
6TNN|1|U|A|1646

Current chains

Chain U

pre-23S rRNA

Nearby chains

Chain m

50S ribosomal protein L23