J4_6TNU_004

3D structure

PDB id

6TNU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUAUG*CGUC*GAG*CGUGUG

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6TNU_004 not in the Motif Atlas

Homologous match to J4_8P9A_013

Geometric discrepancy: 0.1185

The information below is about J4_8P9A_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_12410.1

Basepair signature

cWW-cWW-F-F-cSS-F-cWW-tHS-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

6TNU|1|BQ|C|185
6TNU|1|BQ|U|186
6TNU|1|BQ|A|187
6TNU|1|BQ|U|188
6TNU|1|BQ|G|189
*
6TNU|1|BQ|C|205
6TNU|1|BQ|G|206
6TNU|1|BQ|U|207
6TNU|1|BQ|C|208
*
6TNU|1|BQ|G|212
6TNU|1|BQ|A|213
6TNU|1|BQ|G|214
*
6TNU|1|BQ|C|226
6TNU|1|BQ|G|227
6TNU|1|BQ|U|228
6TNU|1|BQ|G|229
6TNU|1|BQ|U|230
6TNU|1|BQ|G|231

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AK

60S ribosomal protein L26-A

Chain BE

60S ribosomal protein L4-A

Chain BS

5.8S ribosomal RNA; 5.8S rRNA