J4_6TNU_005

3D structure

PDB id

6TNU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAAAUAU*AG*UGAU*AG

Length

15 nucleotides

Bulged bases

6TNU|1|BQ|A|1452, 6TNU|1|BQ|U|1455

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6TNU_005 not in the Motif Atlas

Homologous match to J4_8C3A_003

Geometric discrepancy: 0.1216

The information below is about J4_8C3A_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6TNU|1|BQ|C|1451
6TNU|1|BQ|A|1452
6TNU|1|BQ|A|1453
6TNU|1|BQ|A|1454
6TNU|1|BQ|U|1455
6TNU|1|BQ|A|1456
6TNU|1|BQ|U|1457
*
6TNU|1|BQ|A|1475
6TNU|1|BQ|G|1476
*
6TNU|1|BQ|U|1877
6TNU|1|BQ|G|1878
6TNU|1|BQ|A|1879
6TNU|1|BQ|U|1880
*
6TNU|1|BQ|A|2352
6TNU|1|BQ|G|2353

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AX

60S ribosomal protein L17-A

Chain BC

60S ribosomal protein L31-A

Chain BF

60S ribosomal protein L19-A