J4_6TNU_011

3D structure

PDB id

6TNU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UAA*UC*GCU*AUG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6TNU_011 not in the Motif Atlas

Homologous match to J4_8P9A_020

Geometric discrepancy: 0.1155

The information below is about J4_8P9A_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_65356.1

Basepair signature

cWW-tSS-cWW-cWW-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6TNU|1|BQ|U|3010
6TNU|1|BQ|A|3011
6TNU|1|BQ|A|3012
*
6TNU|1|BQ|U|3042
6TNU|1|BQ|C|3043
*
6TNU|1|BQ|G|3098
6TNU|1|BQ|C|3099
6TNU|1|BQ|U|3100
*
6TNU|1|BQ|A|3134
6TNU|1|BQ|U|3135
6TNU|1|BQ|G|3136

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AB

60S ribosomal protein L23-A

Chain AU

60S ribosomal protein L16-A

Chain BA

60S ribosomal protein L3