J4_6TPQ_001

3D structure

PDB id

6TPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNase M5 bound to 50S ribosome with precursor 5S rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

CC*GAGUAC*GGAAUCCG*CAAG

Length

20 nucleotides

Bulged bases

6TPQ|1|U|C|450

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6TPQ_001 not in the Motif Atlas

Homologous match to J4_4WF9_001

Geometric discrepancy: 0.1463

The information below is about J4_4WF9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

6TPQ|1|U|C|269
6TPQ|1|U|C|270
*
6TPQ|1|U|G|415
6TPQ|1|U|A|416
6TPQ|1|U|G|417
6TPQ|1|U|U|418
6TPQ|1|U|A|419
6TPQ|1|U|C|420
*
6TPQ|1|U|G|444
6TPQ|1|U|G|445
6TPQ|1|U|A|446
6TPQ|1|U|A|447
6TPQ|1|U|U|448
6TPQ|1|U|C|449
6TPQ|1|U|C|450
6TPQ|1|U|G|451
*
6TPQ|1|U|C|466
6TPQ|1|U|A|467
6TPQ|1|U|A|468
6TPQ|1|U|G|469

Current chains

Chain U

pre-23S rRNA

Nearby chains

Chain u

50S ribosomal protein L28