J4_6TPQ_002
3D structure
- PDB id
- 6TPQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RNase M5 bound to 50S ribosome with precursor 5S rRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.07 Å
Loop
- Sequence
- UGAAG*CGCC*GGA*UGUAG
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6TPQ_002 not in the Motif Atlas
- Homologous match to J4_7A0S_002
- Geometric discrepancy: 0.119
- The information below is about J4_7A0S_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_16174.1
- Basepair signature
- cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW
- Number of instances in this motif group
- 5
Unit IDs
6TPQ|1|U|U|338
6TPQ|1|U|G|339
6TPQ|1|U|A|340
6TPQ|1|U|A|341
6TPQ|1|U|G|342
*
6TPQ|1|U|C|358
6TPQ|1|U|G|359
6TPQ|1|U|C|360
6TPQ|1|U|C|361
*
6TPQ|1|U|G|365
6TPQ|1|U|G|366
6TPQ|1|U|A|367
*
6TPQ|1|U|U|379
6TPQ|1|U|G|380
6TPQ|1|U|U|381
6TPQ|1|U|A|382
6TPQ|1|U|G|383
Current chains
- Chain U
- pre-23S rRNA
Nearby chains
- Chain Y
- 50S ribosomal protein L4
- Chain n
- 50S ribosomal protein L24
Coloring options: