J4_6TPQ_008

3D structure

PDB id

6TPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNase M5 bound to 50S ribosome with precursor 5S rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

GACUG*CACAG*UGAC*GCAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6TPQ_008 not in the Motif Atlas

Homologous match to J4_7A0S_008

Geometric discrepancy: 0.1093

The information below is about J4_7A0S_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.6

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6TPQ|1|U|G|1799
6TPQ|1|U|A|1800
6TPQ|1|U|C|1801
6TPQ|1|U|U|1802
6TPQ|1|U|G|1803
*
6TPQ|1|U|C|1815
6TPQ|1|U|A|1816
6TPQ|1|U|C|1817
6TPQ|1|U|A|1818
6TPQ|1|U|G|1819
*
6TPQ|1|U|U|1854
6TPQ|1|U|G|1855
6TPQ|1|U|A|1856
6TPQ|1|U|C|1857
*
6TPQ|1|U|G|2002
6TPQ|1|U|C|2003
6TPQ|1|U|A|2004
6TPQ|1|U|A|2005
6TPQ|1|U|C|2006

Current chains

Chain U

pre-23S rRNA

Nearby chains

Chain W

50S ribosomal protein L2