J4_6TPQ_011
3D structure
- PDB id
- 6TPQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RNase M5 bound to 50S ribosome with precursor 5S rRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.07 Å
Loop
- Sequence
- GAGC*GAC*GGACG*CCC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6TPQ_011 not in the Motif Atlas
- Homologous match to J4_5J7L_028
- Geometric discrepancy: 0.1899
- The information below is about J4_5J7L_028
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_77044.4
- Basepair signature
- cWW-F-tHS-F-cWW-cWW-cWW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
6TPQ|1|U|G|2670
6TPQ|1|U|A|2671
6TPQ|1|U|G|2672
6TPQ|1|U|C|2673
*
6TPQ|1|U|G|2701
6TPQ|1|U|A|2702
6TPQ|1|U|C|2703
*
6TPQ|1|U|G|2758
6TPQ|1|U|G|2759
6TPQ|1|U|A|2760
6TPQ|1|U|C|2761
6TPQ|1|U|G|2762
*
6TPQ|1|U|C|2796
6TPQ|1|U|C|2797
6TPQ|1|U|C|2798
Current chains
- Chain U
- pre-23S rRNA
Nearby chains
- Chain X
- 50S ribosomal protein L3
- Chain c
- 50S ribosomal protein L13
- Chain d
- 50S ribosomal protein L14
Coloring options: