J4_6U48_002
3D structure
- PDB id
- 6U48 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 50S with phazolicin (PHZ) bound in exit tunnel
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.87 Å
Loop
- Sequence
- GGAAG*CGCG*CAG*CGUAC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6U48_002 not in the Motif Atlas
- Homologous match to J4_5J7L_019
- Geometric discrepancy: 0.0739
- The information below is about J4_5J7L_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_71729.5
- Basepair signature
- cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
6U48|1|CA|G|297
6U48|1|CA|G|298
6U48|1|CA|A|299
6U48|1|CA|A|300
6U48|1|CA|G|301
*
6U48|1|CA|C|316
6U48|1|CA|G|317
6U48|1|CA|C|318
6U48|1|CA|G|319
*
6U48|1|CA|C|323
6U48|1|CA|A|324
6U48|1|CA|G|325
*
6U48|1|CA|C|337
6U48|1|CA|G|338
6U48|1|CA|U|339
6U48|1|CA|A|340
6U48|1|CA|C|341
Current chains
- Chain CA
- 23S rRNA
Nearby chains
- Chain CE
- 50S ribosomal protein uL4
- Chain CV
- 50S ribosomal protein uL24
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