J4_6U48_003

3D structure

PDB id

6U48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S with phazolicin (PHZ) bound in exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

6U48|1|CA|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6U48_003 not in the Motif Atlas

Homologous match to J4_5J7L_020

Geometric discrepancy: 0.12

The information below is about J4_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

6U48|1|CA|C|601
6U48|1|CA|A|602
6U48|1|CA|A|603
6U48|1|CA|G|604
*
6U48|1|CA|C|624
6U48|1|CA|G|625
6U48|1|CA|A|626
6U48|1|CA|A|627
6U48|1|CA|G|628
*
6U48|1|CA|C|635
6U48|1|CA|G|636
6U48|1|CA|A|637
6U48|1|CA|G|638
*
6U48|1|CA|C|650
6U48|1|CA|G|651
6U48|1|CA|U|652
6U48|1|CA|U|653
6U48|1|CA|A|654
6U48|1|CA|A|655
6U48|1|CA|G|656

Current chains

Chain CA

23S rRNA

Nearby chains

Chain C4

50S ribosomal protein bL35

Chain CE

50S ribosomal protein uL4

Chain CM

50S ribosomal protein uL15