J4_6U48_005

3D structure

PDB id

6U48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S with phazolicin (PHZ) bound in exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

6U48|1|CA|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6U48_005 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.0819

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6U48|1|CA|G|1310
6U48|1|CA|G|1311
6U48|1|CA|U|1312
6U48|1|CA|U|1313
6U48|1|CA|C|1314
*
6U48|1|CA|G|1338
6U48|1|CA|G|1339
6U48|1|CA|U|1340
6U48|1|CA|G|1341
6U48|1|CA|A|1342
6U48|1|CA|G|1343
*
6U48|1|CA|C|1404
6U48|1|CA|U|1405
*
6U48|1|CA|A|1597
6U48|1|CA|A|1598
6U48|1|CA|U|1599
6U48|1|CA|C|1600
6U48|1|CA|G|1601
6U48|1|CA|U|1602
6U48|1|CA|A|1603
6U48|1|CA|C|1604

Current chains

Chain CA

23S rRNA

Nearby chains

Chain C3

50S ribosomal protein bL34

Chain CU

50S ribosomal protein uL23