J4_6UCQ_009

3D structure

PDB id

6UCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome recycling complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GGGC*GAC*GGAAG*CGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6UCQ_009 not in the Motif Atlas

Homologous match to J4_9DFE_010

Geometric discrepancy: 0.1007

The information below is about J4_9DFE_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.5

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

6UCQ|1|1A|G|2643
6UCQ|1|1A|G|2644
6UCQ|1|1A|G|2645
6UCQ|1|1A|C|2646
*
6UCQ|1|1A|G|2674
6UCQ|1|1A|A|2675
6UCQ|1|1A|C|2676
*
6UCQ|1|1A|G|2731
6UCQ|1|1A|G|2732
6UCQ|1|1A|A|2733
6UCQ|1|1A|A|2734
6UCQ|1|1A|G|2735
*
6UCQ|1|1A|C|2769
6UCQ|1|1A|G|2770
6UCQ|1|1A|C|2771

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1E

50S ribosomal protein L3

Chain 1N

50S ribosomal protein L13

Chain 1O

50S ribosomal protein L14