J4_6UCQ_028

3D structure

PDB id

6UCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome recycling complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

A(4SU)AG*CAG*CGU(7MG)UCC*GU

Length

16 nucleotides

Bulged bases

6UCQ|1|2x|4SU|8, 6UCQ|1|2x|U|47, 6UCQ|1|2x|C|48

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6UCQ_028 not in the Motif Atlas

Homologous match to J4_3WQY_001

Geometric discrepancy: 0.299

The information below is about J4_3WQY_001

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_95067.1

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

48

Unit IDs

6UCQ|1|2x|A|7
6UCQ|1|2x|4SU|8
6UCQ|1|2x|A|9
6UCQ|1|2x|G|10
*
6UCQ|1|2x|C|25
6UCQ|1|2x|A|26
6UCQ|1|2x|G|27
*
6UCQ|1|2x|C|43
6UCQ|1|2x|G|44
6UCQ|1|2x|U|45
6UCQ|1|2x|7MG|46
6UCQ|1|2x|U|47
6UCQ|1|2x|C|48
6UCQ|1|2x|C|49
*
6UCQ|1|2x|G|65
6UCQ|1|2x|U|66

Current chains

Chain 2x

P-site and E-site tRNAs

Nearby chains

Chain 2A

Large subunit ribosomal RNA; LSU rRNA

Chain 2G

50S ribosomal protein L5

Chain 2Z

50S ribosomal protein L25

Chain 2a

Small subunit ribosomal RNA; SSU rRNA

Chain 2m

30S ribosomal protein S13

Chain 2y

Transfer RNA; tRNA