J4_6UO1_017

3D structure

PDB id

6UO1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA (containing pseudouridine at the first position of the codon) and deacylated A-, P-, and E-site tRNAs at 2.95A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

6UO1|1|2A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6UO1_017 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.0982

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

6UO1|1|2A|C|268
6UO1|1|2A|U|269
*
6UO1|1|2A|G|370
6UO1|1|2A|A|371
6UO1|1|2A|G|372
6UO1|1|2A|U|373
6UO1|1|2A|A|374
6UO1|1|2A|C|375
*
6UO1|1|2A|G|399
6UO1|1|2A|G|400
6UO1|1|2A|A|401
6UO1|1|2A|A|402
6UO1|1|2A|U|403
6UO1|1|2A|C|404
6UO1|1|2A|U|405
6UO1|1|2A|G|406
*
6UO1|1|2A|U|421
6UO1|1|2A|A|422
6UO1|1|2A|A|423
6UO1|1|2A|G|424

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 21

50S ribosomal protein L28

Chain 2I

50S ribosomal protein L9