J4_6UZ7_006

3D structure

PDB id

6UZ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

K.lactis 80S ribosome with p/PE tRNA and eIF5B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAAAUAU*AG*UGAU*AG

Length

15 nucleotides

Bulged bases

6UZ7|1|5|A|1423, 6UZ7|1|5|U|1426

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6UZ7_006 not in the Motif Atlas

Homologous match to J4_8P9A_014

Geometric discrepancy: 0.1729

The information below is about J4_8P9A_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_34212.2

Basepair signature

cWW-F-cWW-F-F-F-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

6UZ7|1|5|C|1422
6UZ7|1|5|A|1423
6UZ7|1|5|A|1424
6UZ7|1|5|A|1425
6UZ7|1|5|U|1426
6UZ7|1|5|A|1427
6UZ7|1|5|U|1428
*
6UZ7|1|5|A|1446
6UZ7|1|5|G|1447
*
6UZ7|1|5|U|1846
6UZ7|1|5|G|1847
6UZ7|1|5|A|1848
6UZ7|1|5|U|1849
*
6UZ7|1|5|A|2321
6UZ7|1|5|G|2322

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain AP

KLLA0A06336p

Chain AR

KLLA0E12453p

Chain Bd

KLLA0B02937p