J4_6UZ7_014
3D structure
- PDB id
- 6UZ7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- K.lactis 80S ribosome with p/PE tRNA and eIF5B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CUG*CG*CUUAAGGUAG*UGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 6UZ7|1|5|U|2283
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6UZ7_014 not in the Motif Atlas
- Homologous match to J4_8P9A_018
- Geometric discrepancy: 0.3874
- The information below is about J4_8P9A_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_42306.2
- Basepair signature
- cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
- Number of instances in this motif group
- 6
Unit IDs
6UZ7|1|5|C|2161
6UZ7|1|5|U|2162
6UZ7|1|5|G|2163
*
6UZ7|1|5|C|2217
6UZ7|1|5|G|2218
*
6UZ7|1|5|C|2236
6UZ7|1|5|U|2237
6UZ7|1|5|U|2238
6UZ7|1|5|A|2239
6UZ7|1|5|A|2240
6UZ7|1|5|G|2241
6UZ7|1|5|G|2242
6UZ7|1|5|U|2243
6UZ7|1|5|A|2244
6UZ7|1|5|G|2245
*
6UZ7|1|5|U|2279
6UZ7|1|5|G|2280
6UZ7|1|5|A|2281
6UZ7|1|5|A|2282
6UZ7|1|5|U|2283
6UZ7|1|5|G|2284
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain AA
- KLLA0D16027p
- Chain Bn
- 60S ribosomal protein L41
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