J4_6V39_004
3D structure
- PDB id
- 6V39 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.04 Å
Loop
- Sequence
- CGACAAA*UC*GCUU*AG
- Length
- 15 nucleotides
- Bulged bases
- 6V39|1|AN1|G|1266, 6V39|1|AN1|A|1270, 6V39|1|AN1|U|1645
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6V39_004 not in the Motif Atlas
- Homologous match to J4_7A0S_004
- Geometric discrepancy: 0.5735
- The information below is about J4_7A0S_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_64571.5
- Basepair signature
- cWW-F-cWW-tSS-cWW-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
6V39|1|AN1|C|1265
6V39|1|AN1|G|1266
6V39|1|AN1|A|1267
6V39|1|AN1|C|1268
6V39|1|AN1|A|1269
6V39|1|AN1|A|1270
6V39|1|AN1|A|1271
*
6V39|1|AN1|U|1289
6V39|1|AN1|C|1290
*
6V39|1|AN1|G|1643
6V39|1|AN1|C|1644
6V39|1|AN1|U|1645
6V39|1|AN1|U|1646
*
6V39|1|AN1|A|2005
6V39|1|AN1|G|2006
Current chains
- Chain AN1
- 23s ribosomal RNA
Nearby chains
- Chain M
- 50S ribosomal protein L17
- Chain R
- 50S ribosomal protein L22
- Chain Z
- 50S ribosomal protein L32
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