J4_6V39_011

3D structure

PDB id

6V39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

GAGUAAUG*UC*GUAG*CC

Length

16 nucleotides

Bulged bases

6V39|1|sN1|U|117

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6V39_011 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.1986

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6V39|1|sN1|G|111
6V39|1|sN1|A|112
6V39|1|sN1|G|113
6V39|1|sN1|U|114
6V39|1|sN1|A|115
6V39|1|sN1|A|116
6V39|1|sN1|U|117
6V39|1|sN1|G|118
*
6V39|1|sN1|U|235
6V39|1|sN1|C|236
*
6V39|1|sN1|G|282
6V39|1|sN1|U|283
6V39|1|sN1|A|284
6V39|1|sN1|G|285
*
6V39|1|sN1|C|307
6V39|1|sN1|C|308

Current chains

Chain sN1

16s Ribosomal RNA

Nearby chains

Chain p

30S ribosomal protein S16

Chain q

30S ribosomal protein S17