3D structure

PDB id
6V3A (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with E-site tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
2.82 Å

Loop

Sequence
CC*GAGUAG*UGAAUAUG*CAAG
Length
20 nucleotides
Bulged bases
6V3A|1|AN1|U|404
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6V3A_001 not in the Motif Atlas
Homologous match to J4_5J7L_018
Geometric discrepancy: 0.1406
The information below is about J4_5J7L_018
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_45801.6
Basepair signature
cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW
Number of instances in this motif group
7

Unit IDs

6V3A|1|AN1|C|275
6V3A|1|AN1|C|276
*
6V3A|1|AN1|G|369
6V3A|1|AN1|A|370
6V3A|1|AN1|G|371
6V3A|1|AN1|U|372
6V3A|1|AN1|A|373
6V3A|1|AN1|G|374
*
6V3A|1|AN1|U|398
6V3A|1|AN1|G|399
6V3A|1|AN1|A|400
6V3A|1|AN1|A|401
6V3A|1|AN1|U|402
6V3A|1|AN1|A|403
6V3A|1|AN1|U|404
6V3A|1|AN1|G|405
*
6V3A|1|AN1|C|420
6V3A|1|AN1|A|421
6V3A|1|AN1|A|422
6V3A|1|AN1|G|423

Current chains

Chain AN1
23s ribosomal RNA

Nearby chains

Chain H
50S ribosomal protein L9
Chain W
50S ribosomal protein L28

Coloring options:


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