J4_6V3A_006
3D structure
- PDB id
- 6V3A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with E-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- UC*GGUGAG*CU*AAUCGUA
- Length
- 17 nucleotides
- Bulged bases
- 6V3A|1|AN1|G|1336
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6V3A_006 not in the Motif Atlas
- Homologous match to J4_5J7L_023
- Geometric discrepancy: 0.0902
- The information below is about J4_5J7L_023
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_10313.5
- Basepair signature
- cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
6V3A|1|AN1|U|1308
6V3A|1|AN1|C|1309
*
6V3A|1|AN1|G|1333
6V3A|1|AN1|G|1334
6V3A|1|AN1|U|1335
6V3A|1|AN1|G|1336
6V3A|1|AN1|A|1337
6V3A|1|AN1|G|1338
*
6V3A|1|AN1|C|1399
6V3A|1|AN1|U|1400
*
6V3A|1|AN1|A|1595
6V3A|1|AN1|A|1596
6V3A|1|AN1|U|1597
6V3A|1|AN1|C|1598
6V3A|1|AN1|G|1599
6V3A|1|AN1|U|1600
6V3A|1|AN1|A|1601
Current chains
- Chain AN1
- 23s ribosomal RNA
Nearby chains
- Chain S
- 50S ribosomal protein L23
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