J4_6V3B_001
3D structure
- PDB id
- 6V3B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S in Empty state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.91 Å
Loop
- Sequence
- CC*GAGUAG*UGAAUAUG*CAAG
- Length
- 20 nucleotides
- Bulged bases
- 6V3B|1|AN1|U|404
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6V3B_001 not in the Motif Atlas
- Homologous match to J4_5J7L_018
- Geometric discrepancy: 0.1359
- The information below is about J4_5J7L_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_45801.6
- Basepair signature
- cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
6V3B|1|AN1|C|275
6V3B|1|AN1|C|276
*
6V3B|1|AN1|G|369
6V3B|1|AN1|A|370
6V3B|1|AN1|G|371
6V3B|1|AN1|U|372
6V3B|1|AN1|A|373
6V3B|1|AN1|G|374
*
6V3B|1|AN1|U|398
6V3B|1|AN1|G|399
6V3B|1|AN1|A|400
6V3B|1|AN1|A|401
6V3B|1|AN1|U|402
6V3B|1|AN1|A|403
6V3B|1|AN1|U|404
6V3B|1|AN1|G|405
*
6V3B|1|AN1|C|420
6V3B|1|AN1|A|421
6V3B|1|AN1|A|422
6V3B|1|AN1|G|423
Current chains
- Chain AN1
- 23s ribosomal RNA
Nearby chains
- Chain H
- 50S ribosomal protein L9
- Chain W
- 50S ribosomal protein L28
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