J4_6V3B_011

3D structure

PDB id

6V3B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S in Empty state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.91 Å

Loop

Sequence

GAGUAAUG*UC*GUAG*CC

Length

16 nucleotides

Bulged bases

6V3B|1|sN1|U|117

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6V3B_011 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.1994

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6V3B|1|sN1|G|111
6V3B|1|sN1|A|112
6V3B|1|sN1|G|113
6V3B|1|sN1|U|114
6V3B|1|sN1|A|115
6V3B|1|sN1|A|116
6V3B|1|sN1|U|117
6V3B|1|sN1|G|118
*
6V3B|1|sN1|U|235
6V3B|1|sN1|C|236
*
6V3B|1|sN1|G|282
6V3B|1|sN1|U|283
6V3B|1|sN1|A|284
6V3B|1|sN1|G|285
*
6V3B|1|sN1|C|307
6V3B|1|sN1|C|308

Current chains

Chain sN1

16s Ribosomal RNA

Nearby chains

Chain p

30S ribosomal protein S16

Chain q

30S ribosomal protein S17