3D structure

PDB id
6VMY (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the B. subtilis cobalamin riboswitch
Experimental method
X-RAY DIFFRACTION
Resolution
3.25 Å

Loop

Sequence
GGAAA*UGCG*CAC*GGAUAC
Length
18 nucleotides
Bulged bases
6VMY|1|A|G|305, 6VMY|1|A|U|307
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_44058.1
Basepair signature
cWW-cWW-F-cWW-F-cWW-cWW-F-cWW-F
Number of instances in this motif group
1

Unit IDs

6VMY|1|A|G|245
6VMY|1|A|G|246
6VMY|1|A|A|247
6VMY|1|A|A|248
6VMY|1|A|A|249
*
6VMY|1|A|U|264
6VMY|1|A|G|265
6VMY|1|A|C|266
6VMY|1|A|G|267
*
6VMY|1|A|C|275
6VMY|1|A|A|276
6VMY|1|A|C|277
*
6VMY|1|A|G|304
6VMY|1|A|G|305
6VMY|1|A|A|306
6VMY|1|A|U|307
6VMY|1|A|A|308
6VMY|1|A|C|309

Current chains

Chain A
B. subtilis cobalamin riboswitch

Nearby chains

No other chains within 10Å

Coloring options:

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