J4_6VMY_001
3D structure
- PDB id
- 6VMY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the B. subtilis cobalamin riboswitch
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.25 Å
Loop
- Sequence
- GGAAA*UGCG*CAC*GGAUAC
- Length
- 18 nucleotides
- Bulged bases
- 6VMY|1|A|G|305, 6VMY|1|A|U|307
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_44058.1
- Basepair signature
- cWW-cWW-F-cWW-F-cWW-cWW-F-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
6VMY|1|A|G|245
6VMY|1|A|G|246
6VMY|1|A|A|247
6VMY|1|A|A|248
6VMY|1|A|A|249
*
6VMY|1|A|U|264
6VMY|1|A|G|265
6VMY|1|A|C|266
6VMY|1|A|G|267
*
6VMY|1|A|C|275
6VMY|1|A|A|276
6VMY|1|A|C|277
*
6VMY|1|A|G|304
6VMY|1|A|G|305
6VMY|1|A|A|306
6VMY|1|A|U|307
6VMY|1|A|A|308
6VMY|1|A|C|309
Current chains
- Chain A
- B. subtilis cobalamin riboswitch
Nearby chains
No other chains within 10ÅColoring options: