J4_6VMY_001

3D structure

PDB id

6VMY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the B. subtilis cobalamin riboswitch

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

GGAAA*UGCG*CAC*GGAUAC

Length

18 nucleotides

Bulged bases

6VMY|1|A|G|305, 6VMY|1|A|U|307

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_44058.1

Basepair signature

cWW-cWW-F-cWW-F-cWW-cWW-F-cWW-F

Number of instances in this motif group

1

Unit IDs

6VMY|1|A|G|245
6VMY|1|A|G|246
6VMY|1|A|A|247
6VMY|1|A|A|248
6VMY|1|A|A|249
*
6VMY|1|A|U|264
6VMY|1|A|G|265
6VMY|1|A|C|266
6VMY|1|A|G|267
*
6VMY|1|A|C|275
6VMY|1|A|A|276
6VMY|1|A|C|277
*
6VMY|1|A|G|304
6VMY|1|A|G|305
6VMY|1|A|A|306
6VMY|1|A|U|307
6VMY|1|A|A|308
6VMY|1|A|C|309

Current chains

Chain A

B. subtilis cobalamin riboswitch

Nearby chains