J4_6VU3_004

3D structure

PDB id

6VU3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Escherichia coli transcription-translation complex A (TTC-A) containing mRNA with a 12 nt long spacer

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

6VU3|1|D|C|183, 6VU3|1|D|A|197

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6VU3_004 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.0896

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

6VU3|1|D|G|142
6VU3|1|D|A|143
6VU3|1|D|G|144
*
6VU3|1|D|C|178
6VU3|1|D|A|179
6VU3|1|D|U|180
6VU3|1|D|A|181
6VU3|1|D|A|182
6VU3|1|D|C|183
6VU3|1|D|G|184
*
6VU3|1|D|C|193
6VU3|1|D|C|194
6VU3|1|D|A|195
6VU3|1|D|A|196
6VU3|1|D|A|197
6VU3|1|D|G|198
*
6VU3|1|D|U|219
6VU3|1|D|G|220
6VU3|1|D|C|221

Current chains

Chain D

16S rRNA

Nearby chains

Chain E

30S ribosomal protein S20