J4_6VU3_006

3D structure

PDB id

6VU3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Escherichia coli transcription-translation complex A (TTC-A) containing mRNA with a 12 nt long spacer

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

6VU3|1|a|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6VU3_006 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

6VU3|1|a|C|268
6VU3|1|a|C|269
*
6VU3|1|a|G|370
6VU3|1|a|A|371
6VU3|1|a|G|372
6VU3|1|a|U|373
6VU3|1|a|A|374
6VU3|1|a|G|375
*
6VU3|1|a|U|399
6VU3|1|a|G|400
6VU3|1|a|A|401
6VU3|1|a|A|402
6VU3|1|a|U|403
6VU3|1|a|A|404
6VU3|1|a|U|405
6VU3|1|a|G|406
*
6VU3|1|a|C|421
6VU3|1|a|A|422
6VU3|1|a|A|423
6VU3|1|a|G|424

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L28

Chain r

50S ribosomal protein L9