3D structure

PDB id
6VWL (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome bound to HIV frameshifting stem-loop (FSS) and P/E tRNA (rotated conformation)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GAG*CAUAACG*CCAAAG*UGC
Length
19 nucleotides
Bulged bases
6VWL|1|1|C|183, 6VWL|1|1|A|197
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6VWL_002 not in the Motif Atlas
Homologous match to J4_5J7L_002
Geometric discrepancy: 0.2304
The information below is about J4_5J7L_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_01665.1
Basepair signature
cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW
Number of instances in this motif group
1

Unit IDs

6VWL|1|1|G|142
6VWL|1|1|A|143
6VWL|1|1|G|144
*
6VWL|1|1|C|178
6VWL|1|1|A|179
6VWL|1|1|U|180
6VWL|1|1|A|181
6VWL|1|1|A|182
6VWL|1|1|C|183
6VWL|1|1|G|184
*
6VWL|1|1|C|193
6VWL|1|1|C|194
6VWL|1|1|A|195
6VWL|1|1|A|196
6VWL|1|1|A|197
6VWL|1|1|G|198
*
6VWL|1|1|U|219
6VWL|1|1|G|220
6VWL|1|1|C|221

Current chains

Chain 1
16S ribosomal RNA

Nearby chains

Chain s
30S ribosomal protein S20

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.5025 s
Application loaded.