J4_6VWL_004

3D structure

PDB id

6VWL (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P/E tRNA (rotated conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

6VWL|1|2|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6VWL_004 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.137

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

6VWL|1|2|C|268
6VWL|1|2|C|269
*
6VWL|1|2|G|370
6VWL|1|2|A|371
6VWL|1|2|G|372
6VWL|1|2|U|373
6VWL|1|2|A|374
6VWL|1|2|G|375
*
6VWL|1|2|U|399
6VWL|1|2|G|400
6VWL|1|2|A|401
6VWL|1|2|A|402
6VWL|1|2|U|403
6VWL|1|2|A|404
6VWL|1|2|U|405
6VWL|1|2|G|406
*
6VWL|1|2|C|421
6VWL|1|2|A|422
6VWL|1|2|A|423
6VWL|1|2|G|424

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L9

Chain V

50S ribosomal protein L28