J4_6VWL_006

3D structure

PDB id

6VWL (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P/E tRNA (rotated conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAUAAA*UC*GCUU*AG

Length

15 nucleotides

Bulged bases

6VWL|1|2|G|1271, 6VWL|1|2|A|1272, 6VWL|1|2|U|1273, 6VWL|1|2|A|1275, 6VWL|1|2|U|1647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6VWL_006 not in the Motif Atlas

Homologous match to J4_5J7L_021

Geometric discrepancy: 0.1036

The information below is about J4_5J7L_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.5

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

6VWL|1|2|C|1270
6VWL|1|2|G|1271
6VWL|1|2|A|1272
6VWL|1|2|U|1273
6VWL|1|2|A|1274
6VWL|1|2|A|1275
6VWL|1|2|A|1276
*
6VWL|1|2|U|1294
6VWL|1|2|C|1295
*
6VWL|1|2|G|1645
6VWL|1|2|C|1646
6VWL|1|2|U|1647
6VWL|1|2|U|1648
*
6VWL|1|2|A|2009
6VWL|1|2|G|2010

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain L

50S ribosomal protein L17

Chain Q

50S ribosomal protein L22

Chain Y

50S ribosomal protein L32