J4_6VWL_013

3D structure

PDB id

6VWL (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P/E tRNA (rotated conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGGC*GAC*GGAAG*UGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6VWL_013 not in the Motif Atlas

Homologous match to J4_5J7L_028

Geometric discrepancy: 0.2029

The information below is about J4_5J7L_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.4

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

6VWL|1|2|G|2643
6VWL|1|2|G|2644
6VWL|1|2|G|2645
6VWL|1|2|C|2646
*
6VWL|1|2|G|2674
6VWL|1|2|A|2675
6VWL|1|2|C|2676
*
6VWL|1|2|G|2731
6VWL|1|2|G|2732
6VWL|1|2|A|2733
6VWL|1|2|A|2734
6VWL|1|2|G|2735
*
6VWL|1|2|U|2769
6VWL|1|2|G|2770
6VWL|1|2|C|2771

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain G

50S ribosomal protein L13

Chain I

50S ribosomal protein L14