3D structure

PDB id
6VWM (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure I)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
CC*GAGUAG*UGAAUAUG*CAAG
Length
20 nucleotides
Bulged bases
6VWM|1|2|U|405
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6VWM_004 not in the Motif Atlas
Homologous match to J4_5J7L_018
Geometric discrepancy: 0.2185
The information below is about J4_5J7L_018
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_45801.6
Basepair signature
cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW
Number of instances in this motif group
7

Unit IDs

6VWM|1|2|C|268
6VWM|1|2|C|269
*
6VWM|1|2|G|370
6VWM|1|2|A|371
6VWM|1|2|G|372
6VWM|1|2|U|373
6VWM|1|2|A|374
6VWM|1|2|G|375
*
6VWM|1|2|U|399
6VWM|1|2|G|400
6VWM|1|2|A|401
6VWM|1|2|A|402
6VWM|1|2|U|403
6VWM|1|2|A|404
6VWM|1|2|U|405
6VWM|1|2|G|406
*
6VWM|1|2|C|421
6VWM|1|2|A|422
6VWM|1|2|A|423
6VWM|1|2|G|424

Current chains

Chain 2
23S ribosomal RNA

Nearby chains

Chain G
50S ribosomal protein L9
Chain V
50S ribosomal protein L28

Coloring options:


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