J4_6VWN_011

3D structure

PDB id

6VWN (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

6VWN|1|2|U|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6VWN_011 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.1479

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

6VWN|1|2|C|1833
6VWN|1|2|U|1834
6VWN|1|2|G|1835
*
6VWN|1|2|C|1905
6VWN|1|2|G|1906
*
6VWN|1|2|C|1924
6VWN|1|2|C|1925
6VWN|1|2|U|1926
6VWN|1|2|A|1927
6VWN|1|2|A|1928
6VWN|1|2|G|1929
6VWN|1|2|G|1930
6VWN|1|2|U|1931
6VWN|1|2|A|1932
6VWN|1|2|G|1933
*
6VWN|1|2|C|1967
6VWN|1|2|G|1968
6VWN|1|2|A|1969
6VWN|1|2|A|1970
6VWN|1|2|U|1971
6VWN|1|2|G|1972

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain 1

Small subunit ribosomal RNA; SSU rRNA

Chain 5

Transfer RNA; tRNA

Chain A

50S ribosomal protein L2