J4_6VWN_014
3D structure
- PDB id
- 6VWN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- AUAG*CAG*CGUGUCC*GU
- Length
- 16 nucleotides
- Bulged bases
- 6VWN|1|5|U|8, 6VWN|1|5|U|47, 6VWN|1|5|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6VWN_014 not in the Motif Atlas
- Homologous match to J4_7UQ6_001
- Geometric discrepancy: 0.2881
- The information below is about J4_7UQ6_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.28
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
6VWN|1|5|A|7
6VWN|1|5|U|8
6VWN|1|5|A|9
6VWN|1|5|G|10
*
6VWN|1|5|C|25
6VWN|1|5|A|26
6VWN|1|5|G|27
*
6VWN|1|5|C|43
6VWN|1|5|G|44
6VWN|1|5|U|45
6VWN|1|5|G|46
6VWN|1|5|U|47
6VWN|1|5|C|48
6VWN|1|5|C|49
*
6VWN|1|5|G|65
6VWN|1|5|U|66
Current chains
- Chain 5
- tRNAPhe
Nearby chains
- Chain 1
- Small subunit ribosomal RNA; SSU rRNA
- Chain 2
- Large subunit ribosomal RNA; LSU rRNA
- Chain D
- 50S ribosomal protein L5
- Chain l
- 30S ribosomal protein S13
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