J4_6VYQ_004

3D structure

PDB id

6VYQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A1 (TTC-A1) containing an 15 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

6VYQ|1|D|C|183, 6VYQ|1|D|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6VYQ_004 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.0896

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

6VYQ|1|D|G|142
6VYQ|1|D|A|143
6VYQ|1|D|G|144
*
6VYQ|1|D|C|178
6VYQ|1|D|A|179
6VYQ|1|D|U|180
6VYQ|1|D|A|181
6VYQ|1|D|A|182
6VYQ|1|D|C|183
6VYQ|1|D|G|184
*
6VYQ|1|D|C|193
6VYQ|1|D|C|194
6VYQ|1|D|A|195
6VYQ|1|D|A|196
6VYQ|1|D|A|197
6VYQ|1|D|G|198
*
6VYQ|1|D|U|219
6VYQ|1|D|G|220
6VYQ|1|D|C|221

Current chains

Chain D

16S rRNA

Nearby chains

Chain E

30S ribosomal protein S20