J4_6VYQ_006

3D structure

PDB id

6VYQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A1 (TTC-A1) containing an 15 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

6VYQ|1|a|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6VYQ_006 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.0999

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

6VYQ|1|a|C|268
6VYQ|1|a|C|269
*
6VYQ|1|a|G|370
6VYQ|1|a|A|371
6VYQ|1|a|G|372
6VYQ|1|a|U|373
6VYQ|1|a|A|374
6VYQ|1|a|G|375
*
6VYQ|1|a|U|399
6VYQ|1|a|G|400
6VYQ|1|a|A|401
6VYQ|1|a|A|402
6VYQ|1|a|U|403
6VYQ|1|a|A|404
6VYQ|1|a|U|405
6VYQ|1|a|G|406
*
6VYQ|1|a|C|421
6VYQ|1|a|A|422
6VYQ|1|a|A|423
6VYQ|1|a|G|424

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L28

Chain r

50S ribosomal protein L9