J4_6VYQ_009

3D structure

PDB id

6VYQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A1 (TTC-A1) containing an 15 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGAUAAA*UC*GCUU*AG

Length

15 nucleotides

Bulged bases

6VYQ|1|a|G|1271, 6VYQ|1|a|A|1272, 6VYQ|1|a|U|1273, 6VYQ|1|a|U|1647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6VYQ_009 not in the Motif Atlas

Homologous match to J4_5J7L_021

Geometric discrepancy: 0.0572

The information below is about J4_5J7L_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.5

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

6VYQ|1|a|C|1270
6VYQ|1|a|G|1271
6VYQ|1|a|A|1272
6VYQ|1|a|U|1273
6VYQ|1|a|A|1274
6VYQ|1|a|A|1275
6VYQ|1|a|A|1276
*
6VYQ|1|a|U|1294
6VYQ|1|a|C|1295
*
6VYQ|1|a|G|1645
6VYQ|1|a|C|1646
6VYQ|1|a|U|1647
6VYQ|1|a|U|1648
*
6VYQ|1|a|A|2009
6VYQ|1|a|G|2010

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L22

Chain i

50S ribosomal protein L32

Chain w

50S ribosomal protein L17